Biophysics and computational biology
Section: Mathematical & Computational Biology
Number of articles: 14
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Section: Mathematical & Computational Biology ; Topics: Archaeology, Biochemistry, Biophysics and computational biology
Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins
Rodriguez Palomo, Ismael;
Nair, Bharath;
Chiang, Yun;
Dekker, Joannes;
Dartigues, Benjamin;
Mackie, Meaghan;
Evans, Miranda;
Macleod, Ruairidh;
Olsen, Jesper V.;
Collins, Matthew J.
10.24072/pcjournal.491 - Peer Community Journal, Volume 4 (2024), article no. e107.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Microbiology, Systems biology
In silico identification of switching nodes in metabolic networks
10.24072/pcjournal.480 - Peer Community Journal, Volume 4 (2024), article no. e102.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology
HairSplitter: haplotype assembly from long, noisy reads
10.24072/pcjournal.481 - Peer Community Journal, Volume 4 (2024), article no. e96.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Applied mathematics
Phenotype control and elimination of variables in Boolean networks
10.24072/pcjournal.452 - Peer Community Journal, Volume 4 (2024), article no. e79.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Computer sciences, Applied mathematics
When Three Trees Go to War
10.24072/pcjournal.419 - Peer Community Journal, Volume 4 (2024), article no. e54.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Evolution, Genetics/Genomics
An approximate likelihood method reveals ancient gene flow between human, chimpanzee and gorilla
10.24072/pcjournal.359 - Peer Community Journal, Volume 4 (2024), article no. e3.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/Genomics, Health sciences
Cancer phylogenetic tree inference at scale from 1000s of single cell genomes
Salehi, Sohrab; Dorri, Fatemeh; Chern, Kevin; Kabeer, Farhia;
Rusk, Nicole;
Funnell, Tyler;
Williams, Marc J.;
Lai, Daniel;
Andronescu, Mirela;
Campbell, Kieran R.;
McPherson, Andrew;
Aparicio, Samuel;
Roth, Andrew;
Shah, Sohrab P.;
Bouchard-Côté, Alexandre
10.24072/pcjournal.292 - Peer Community Journal, Volume 3 (2023), article no. e63.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/Genomics, Population biology
Population genetics: coalescence rate and demographic parameters inference
10.24072/pcjournal.285 - Peer Community Journal, Volume 3 (2023), article no. e53.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/Genomics
Marker and source-marker reprogramming of Most Permissive Boolean networks and ensembles with BoNesis
10.24072/pcjournal.255 - Peer Community Journal, Volume 3 (2023), article no. e30.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/Genomics
HMMploidy: inference of ploidy levels from short-read sequencing data
Soraggi, Samuele;
Rhodes, Johanna;
Altinkaya, Isin;
Tarrant, Oliver;
Balloux, Francois;
Fisher, Matthew C;
Fumagalli, Matteo
10.24072/pcjournal.178 - Peer Community Journal, Volume 2 (2022), article no. e60.
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